LOC100183183 protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC100183183

Biogenesis of lysosome-related organelles complex 1 subunit 1-like. (127 aa)

Predicted Functional Partners:

LOC100181388

0.981

LOC100184422

0.949

LOC100176356

0.936

F6UJ17_CIOIN

0.897

H2XJS9_CIOIN

0.897

H2Y2H0_CIOIN

0.897

LOC101242531

0.732

LOC100187102

0.700

LOC113474176

0.680

F7AMF6_CIOIN

0.607

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6UJ17_CIOIN	F7AMF6_CIOIN	ENSCINP00000015421	ENSCINP00000003530	Uncharacterized protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.999
F6UJ17_CIOIN	H2XJS9_CIOIN	ENSCINP00000015421	ENSCINP00000029911	Uncharacterized protein.	Protein kinase domain-containing protein.	0.985
F6UJ17_CIOIN	H2Y2H0_CIOIN	ENSCINP00000015421	ENSCINP00000036105	Uncharacterized protein.	Protein kinase domain-containing protein.	0.997
F6UJ17_CIOIN	LOC100176356	ENSCINP00000015421	ENSCINP00000035812	Uncharacterized protein.	SNARE-associated protein Snapin-like.	0.894
F6UJ17_CIOIN	LOC100183183	ENSCINP00000015421	ENSCINP00000032377	Uncharacterized protein.	Biogenesis of lysosome-related organelles complex 1 subunit 1-like.	0.897
F7AMF6_CIOIN	F6UJ17_CIOIN	ENSCINP00000003530	ENSCINP00000015421	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Uncharacterized protein.	0.999
F7AMF6_CIOIN	H2XJS9_CIOIN	ENSCINP00000003530	ENSCINP00000029911	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Protein kinase domain-containing protein.	0.999
F7AMF6_CIOIN	H2Y2H0_CIOIN	ENSCINP00000003530	ENSCINP00000036105	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Protein kinase domain-containing protein.	0.999
F7AMF6_CIOIN	LOC100183183	ENSCINP00000003530	ENSCINP00000032377	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Biogenesis of lysosome-related organelles complex 1 subunit 1-like.	0.607
H2XJS9_CIOIN	F6UJ17_CIOIN	ENSCINP00000029911	ENSCINP00000015421	Protein kinase domain-containing protein.	Uncharacterized protein.	0.985
H2XJS9_CIOIN	F7AMF6_CIOIN	ENSCINP00000029911	ENSCINP00000003530	Protein kinase domain-containing protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.999
H2XJS9_CIOIN	H2Y2H0_CIOIN	ENSCINP00000029911	ENSCINP00000036105	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.985
H2XJS9_CIOIN	LOC100176356	ENSCINP00000029911	ENSCINP00000035812	Protein kinase domain-containing protein.	SNARE-associated protein Snapin-like.	0.894
H2XJS9_CIOIN	LOC100183183	ENSCINP00000029911	ENSCINP00000032377	Protein kinase domain-containing protein.	Biogenesis of lysosome-related organelles complex 1 subunit 1-like.	0.897
H2Y2H0_CIOIN	F6UJ17_CIOIN	ENSCINP00000036105	ENSCINP00000015421	Protein kinase domain-containing protein.	Uncharacterized protein.	0.997
H2Y2H0_CIOIN	F7AMF6_CIOIN	ENSCINP00000036105	ENSCINP00000003530	Protein kinase domain-containing protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.999
H2Y2H0_CIOIN	H2XJS9_CIOIN	ENSCINP00000036105	ENSCINP00000029911	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.985
H2Y2H0_CIOIN	LOC100176356	ENSCINP00000036105	ENSCINP00000035812	Protein kinase domain-containing protein.	SNARE-associated protein Snapin-like.	0.894
H2Y2H0_CIOIN	LOC100183183	ENSCINP00000036105	ENSCINP00000032377	Protein kinase domain-containing protein.	Biogenesis of lysosome-related organelles complex 1 subunit 1-like.	0.897
LOC100176356	F6UJ17_CIOIN	ENSCINP00000035812	ENSCINP00000015421	SNARE-associated protein Snapin-like.	Uncharacterized protein.	0.894