H2XS56_CIOIN protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H2XS56_CIOIN

ANK_REP_REGION domain-containing protein. (420 aa)

Predicted Functional Partners:

F6UDF7_CIOIN

0.902

F7A2X8_CIOIN

0.661

F6ZBW6_CIOIN

0.637

LOC100182501

0.600

p53/p73-a

0.568

P53/p73-b

0.568

stat-b

0.559

F6PPL2_CIOIN

0.559

F6ZE60_CIOIN

0.540

F6UNP2_CIOIN

0.540

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PPL2_CIOIN	H2XS56_CIOIN	ENSCINP00000020503	ENSCINP00000032490	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.559
F6UDF7_CIOIN	F6UNP2_CIOIN	ENSCINP00000017513	ENSCINP00000001981	ANK_REP_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.580
F6UDF7_CIOIN	F6ZE60_CIOIN	ENSCINP00000017513	ENSCINP00000000838	ANK_REP_REGION domain-containing protein.	ANAPC4 domain-containing protein.	0.598
F6UDF7_CIOIN	H2XS56_CIOIN	ENSCINP00000017513	ENSCINP00000032490	ANK_REP_REGION domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.902
F6UDF7_CIOIN	LOC100182501	ENSCINP00000017513	ENSCINP00000014260	ANK_REP_REGION domain-containing protein.	TPR_REGION domain-containing protein.	0.575
F6UNP2_CIOIN	F6UDF7_CIOIN	ENSCINP00000001981	ENSCINP00000017513	WD_REPEATS_REGION domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.580
F6UNP2_CIOIN	F6ZE60_CIOIN	ENSCINP00000001981	ENSCINP00000000838	WD_REPEATS_REGION domain-containing protein.	ANAPC4 domain-containing protein.	0.991
F6UNP2_CIOIN	H2XS56_CIOIN	ENSCINP00000001981	ENSCINP00000032490	WD_REPEATS_REGION domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.540
F6UNP2_CIOIN	LOC100182501	ENSCINP00000001981	ENSCINP00000014260	WD_REPEATS_REGION domain-containing protein.	TPR_REGION domain-containing protein.	0.972
F6ZBW6_CIOIN	H2XS56_CIOIN	ENSCINP00000014493	ENSCINP00000032490	Ras-associating domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.637
F6ZE60_CIOIN	F6UDF7_CIOIN	ENSCINP00000000838	ENSCINP00000017513	ANAPC4 domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.598
F6ZE60_CIOIN	F6UNP2_CIOIN	ENSCINP00000000838	ENSCINP00000001981	ANAPC4 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.991
F6ZE60_CIOIN	H2XS56_CIOIN	ENSCINP00000000838	ENSCINP00000032490	ANAPC4 domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.540
F6ZE60_CIOIN	LOC100182501	ENSCINP00000000838	ENSCINP00000014260	ANAPC4 domain-containing protein.	TPR_REGION domain-containing protein.	0.999
F7A2X8_CIOIN	H2XS56_CIOIN	ENSCINP00000015809	ENSCINP00000032490	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	ANK_REP_REGION domain-containing protein.	0.661
H2XS56_CIOIN	F6PPL2_CIOIN	ENSCINP00000032490	ENSCINP00000020503	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.559
H2XS56_CIOIN	F6UDF7_CIOIN	ENSCINP00000032490	ENSCINP00000017513	ANK_REP_REGION domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.902
H2XS56_CIOIN	F6UNP2_CIOIN	ENSCINP00000032490	ENSCINP00000001981	ANK_REP_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.540
H2XS56_CIOIN	F6ZBW6_CIOIN	ENSCINP00000032490	ENSCINP00000014493	ANK_REP_REGION domain-containing protein.	Ras-associating domain-containing protein.	0.637
H2XS56_CIOIN	F6ZE60_CIOIN	ENSCINP00000032490	ENSCINP00000000838	ANK_REP_REGION domain-containing protein.	ANAPC4 domain-containing protein.	0.540