STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2XT29_CIOINNcstrn_small domain-containing protein. (568 aa)    
Predicted Functional Partners:
F6RA92_CIOIN
Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.
   
 0.996
F6TN99_CIOIN
Uncharacterized protein.
   
 0.978
n
Uncharacterized protein.
    
 0.957
H2XPV1_CIOIN
Uncharacterized protein.
   
 
  0.905
LOC100101826
Uncharacterized protein.
    
 0.796
H2XTV7_CIOIN
BPTI/Kunitz inhibitor domain-containing protein.
    
 0.626
Numb
PID domain-containing protein.
      
 0.613
H2XWC1_CIOIN
GOLD domain-containing protein.
    
 
 0.592
F6Y9D9_CIOIN
Uncharacterized protein.
    
 
 0.563
H2XVU8_CIOIN
Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.
    
 0.528
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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