STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2XT39_CIOINUncharacterized protein. (494 aa)    
Predicted Functional Partners:
LOC100177416
Sperm-associated antigen 8-like.
   
   0.778
tektinB1
Tektin B1.
  
 
0.756
efhc2
EFHC2 protein.
   
 
 0.754
calx
Calaxin.
   
 
 0.717
pf-rib
Protofilament ribbon protein.
   
 
 0.696
LOC100185443
Protein Flattop-like.
   
 
 0.690
LOC100177721
WD_REPEATS_REGION domain-containing protein.
   
 
 0.679
ic5
DC2-related axonemal dynein intermediate chain 5.
   
 
 0.658
F6XBA5_CIOIN
Uncharacterized protein.
   
 
 0.657
LOC100182799
Uncharacterized protein.
   
   0.657
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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