STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113475776Uncharacterized protein LOC113475776 isoform X2. (367 aa)    
Predicted Functional Partners:
Raf1
Uncharacterized protein.
   
 0.859
H2XK39_CIOIN
Protein kinase domain-containing protein.
   
 0.792
F6TI28_CIOIN
Mitogen-activated protein kinase.
   
 0.685
erk1/2
Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.
   
 0.685
Erk5
Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.
   
 0.685
erk3/4
Protein kinase domain-containing protein.
    
 0.669
F6XR36_CIOIN
Protein kinase domain-containing protein.
   
 0.562
LOC100176155
Uncharacterized protein.
     
 0.562
F6RBA3_CIOIN
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
 0.562
H2XYL8_CIOIN
Uncharacterized protein.
   
 0.562
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.