STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100178401Uncharacterized protein. (250 aa)    
Predicted Functional Partners:
H2XVQ2_CIOIN
Uncharacterized protein.
    
 0.965
F7BA39_CIOIN
Uncharacterized protein.
   
 0.940
F7AMF6_CIOIN
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 0.935
F6UP73_CIOIN
ENTH domain-containing protein.
     
  0.900
F6Z0L2_CIOIN
Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.
    
 0.900
LOC100182553
AP-2 complex subunit mu isoform X3; Belongs to the adaptor complexes medium subunit family.
    
 0.814
F7A6N9_CIOIN
Uncharacterized protein.
   
 0.813
F6UJ17_CIOIN
Uncharacterized protein.
    
 0.813
H2XJS9_CIOIN
Protein kinase domain-containing protein.
    
 0.813
H2Y2H0_CIOIN
Protein kinase domain-containing protein.
    
 0.813
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.