STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100182802Nucleoplasmin-like protein ANO39. (331 aa)    
Predicted Functional Partners:
cirgg1
Uncharacterized protein.
   
 
 0.934
LOC100186763
60S ribosomal protein L5.
   
 
 0.850
LOC104265886
Histone-binding protein RBBP4.
   
 0.726
LOC100178367
Small ubiquitin-related modifier.
   
 0.690
F6U609_CIOIN
Nop domain-containing protein.
   
  
 0.687
LOC100183367
RuvB-like helicase; Belongs to the RuvB family.
   
 
  0.670
H2Y1V2_CIOIN
SURF6 domain-containing protein.
   
 
 0.597
LOC100184944
Centromere protein I-like isoform X1.
   
  0.591
LOC100182620
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 
 0.590
F6X986_CIOIN
RRM domain-containing protein.
   
   0.563
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.