STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100185215Autophagy-related protein 101. (227 aa)    
Predicted Functional Partners:
F7A9X0_CIOIN
Protein kinase domain-containing protein.
    
 0.998
F6RF40_CIOIN
Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.
    
 0.997
F6ZRJ8_CIOIN
Uncharacterized protein.
    
 0.970
LOC100186285
Target of rapamycin complex subunit lst8.
     
 0.965
F6VK85_CIOIN
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
     
 0.942
F7BMZ0_CIOIN
Uncharacterized protein.
    
 0.938
LOC100186064
Serine/threonine-protein phosphatase.
     
  0.900
H2XJF2_CIOIN
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.867
F7ADE5_CIOIN
APG6 domain-containing protein.
    
 0.866
LOC100182401
Beclin 1-associated autophagy-related key regulator.
    
 0.865
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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