STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100186201HAUS augmin-like complex subunit 8 isoform X1. (454 aa)    
Predicted Functional Partners:
LOC100182198
Uncharacterized protein LOC100182198.
    
 0.959
LOC100175780
Uncharacterized protein LOC100175780.
   
 0.957
F6X8U3_CIOIN
Uncharacterized protein.
    
 0.948
F6U088_CIOIN
Uncharacterized protein.
    
 0.895
F7BKM3_CIOIN
Uncharacterized protein.
     
 0.628
F6SNI9_CIOIN
Uncharacterized protein.
    
 0.580
LOC100187429
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
    
 0.580
F6TZ23_CIOIN
WD_REPEATS_REGION domain-containing protein.
     
 0.527
F6ZZG0_CIOIN
Uncharacterized protein.
   
 
  0.476
LOC100186466
Integral membrane protein GPR137B-like.
   
  
 0.475
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.