STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2XWH4_CIOINLLGL domain-containing protein. (101 aa)    
Predicted Functional Partners:
LOC100187429
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.841
F6Y321_CIOIN
t-SNARE coiled-coil homology domain-containing protein.
    
 0.812
F6SNI9_CIOIN
Uncharacterized protein.
    
 0.719
LOC100184004
Vesicle transport through interaction with t-SNAREs homolog 1B isoform X1.
    
 0.686
F7A7X6_CIOIN
V-SNARE coiled-coil homology domain-containing protein.
    
 0.684
H2Y0C8_CIOIN
Syntaxin-6_N domain-containing protein.
    
 0.670
F6Z6E4_CIOIN
V-SNARE domain-containing protein.
    
 0.655
H2XU17_CIOIN
Longin domain-containing protein.
     
 0.652
H2XQ34_CIOIN
Uncharacterized protein.
    
 0.643
F6Y3U3_CIOIN
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
    
 0.638
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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