STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100187405Uncharacterized protein. (383 aa)    
Predicted Functional Partners:
LOC100183130
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 
 0.506
spata4
Calponin-homology (CH) domain-containing protein.
      
 0.489
LOC100177840
MYND-type domain-containing protein.
      
 0.474
LOC100177815
elongin-C-like; Belongs to the SKP1 family.
    
   0.461
H2XLA1_CIOIN
Uncharacterized protein.
      
 0.457
F7BMH5_CIOIN
UBX domain-containing protein.
    
   0.430
F6TCE2_CIOIN
Ribosomal_L2 domain-containing protein.
   
  
 0.408
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.