STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2XX55_CIOINUncharacterized protein. (233 aa)    
Predicted Functional Partners:
LOC100177927
FUN14 domain-containing protein 1B-like isoform X1.
     
 0.992
F6XRG3_CIOIN
Prohibitin.
    
 
 0.581
LOC100181904
Rhomboid protein 1, mitochondrial.
   
  
 0.543
F6PMK8_CIOIN
Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
    
 
 0.525
F6SYE0_CIOIN
Protein kinase domain-containing protein.
    
 
 0.522
LOC100176359
Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
      
 0.506
Socs6
Uncharacterized protein.
      
 0.483
LOC100185956
Mixed lineage kinase domain-like protein.
    
 
 0.482
F7BAT7_CIOIN
Prohibitin.
    
 
 0.460
F6Q2J0_CIOIN
BTB domain-containing protein.
    
 
 0.455
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.