STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100177325Ras-related protein Rab-4B. (217 aa)    
Predicted Functional Partners:
H2XVQ2_CIOIN
Uncharacterized protein.
    
 0.853
H2XNI5_CIOIN
Ig-like domain-containing protein.
   
 0.739
gla1
Uncharacterized protein LOC780869.
   
 0.704
F6UN86_CIOIN
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.
   
 0.702
F6Q8V1_CIOIN
FYVE-type domain-containing protein.
    
 
 0.675
H2XZ06_CIOIN
Uncharacterized protein.
    
 
 0.675
LOC100177402
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.655
H2XMQ8_CIOIN
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
   
 0.642
LOC100182193
Ras-related protein Rab-5B.
  
0.615
F6QAQ0_CIOIN
RabGGT_insert domain-containing protein.
   
 0.609
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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