STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2XYD3_CIOINPID domain-containing protein. (358 aa)    
Predicted Functional Partners:
F6U088_CIOIN
Uncharacterized protein.
    
 
 0.785
syn
Uncharacterized protein.
    
 
 0.680
LOC100183108
Uncharacterized protein.
      
 0.658
zf(zz)-4
Zinc finger protein ZF(ZZ)-4.
      
 0.656
H2XWJ0_CIOIN
ZZ-type domain-containing protein.
      
 0.656
LOC100181332
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
      
 0.655
F6UMD7_CIOIN
Uncharacterized protein.
      
 0.654
F7AYZ1_CIOIN
Uncharacterized protein; Belongs to the membrane-bound acyltransferase family.
      
 0.651
H2XLI1_CIOIN
Uncharacterized protein.
      
 0.651
LOC100181703
Probable imidazolonepropionase.
      
 0.650
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.