H2XYD4_CIOIN protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H2XYD4_CIOIN

Uncharacterized protein. (216 aa)

Predicted Functional Partners:

LOC100177850

0.606

F6WRI9_CIOIN

0.518

H2XLP4_CIOIN

0.518

H2XPT0_CIOIN

0.518

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6WRI9_CIOIN	H2XLP4_CIOIN	ENSCINP00000016316	ENSCINP00000030576	HECT domain-containing protein.	Uncharacterized protein.	0.925
F6WRI9_CIOIN	H2XPT0_CIOIN	ENSCINP00000016316	ENSCINP00000031664	HECT domain-containing protein.	Uncharacterized protein.	0.410
F6WRI9_CIOIN	H2XYD4_CIOIN	ENSCINP00000016316	ENSCINP00000034668	HECT domain-containing protein.	Uncharacterized protein.	0.518
H2XLP4_CIOIN	F6WRI9_CIOIN	ENSCINP00000030576	ENSCINP00000016316	Uncharacterized protein.	HECT domain-containing protein.	0.925
H2XLP4_CIOIN	H2XPT0_CIOIN	ENSCINP00000030576	ENSCINP00000031664	Uncharacterized protein.	Uncharacterized protein.	0.461
H2XLP4_CIOIN	H2XYD4_CIOIN	ENSCINP00000030576	ENSCINP00000034668	Uncharacterized protein.	Uncharacterized protein.	0.518
H2XPT0_CIOIN	F6WRI9_CIOIN	ENSCINP00000031664	ENSCINP00000016316	Uncharacterized protein.	HECT domain-containing protein.	0.410
H2XPT0_CIOIN	H2XLP4_CIOIN	ENSCINP00000031664	ENSCINP00000030576	Uncharacterized protein.	Uncharacterized protein.	0.461
H2XPT0_CIOIN	H2XYD4_CIOIN	ENSCINP00000031664	ENSCINP00000034668	Uncharacterized protein.	Uncharacterized protein.	0.518
H2XYD4_CIOIN	F6WRI9_CIOIN	ENSCINP00000034668	ENSCINP00000016316	Uncharacterized protein.	HECT domain-containing protein.	0.518
H2XYD4_CIOIN	H2XLP4_CIOIN	ENSCINP00000034668	ENSCINP00000030576	Uncharacterized protein.	Uncharacterized protein.	0.518
H2XYD4_CIOIN	H2XPT0_CIOIN	ENSCINP00000034668	ENSCINP00000031664	Uncharacterized protein.	Uncharacterized protein.	0.518
H2XYD4_CIOIN	LOC100177850	ENSCINP00000034668	ENSCINP00000031514	Uncharacterized protein.	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.	0.606
LOC100177850	H2XYD4_CIOIN	ENSCINP00000031514	ENSCINP00000034668	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.	Uncharacterized protein.	0.606