STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2XZ03_CIOINUncharacterized protein. (310 aa)    
Predicted Functional Partners:
F6RZH2_CIOIN
Uncharacterized protein.
 
   
  0.612
F6YQ38_CIOIN
Uncharacterized protein.
    
 0.565
H2XUP8_CIOIN
Ig-like domain-containing protein.
     
 0.541
LOC100179911
Uncharacterized protein.
     
 
0.540
H2XVK0_CIOIN
Uncharacterized protein.
     
  0.540
ikk-epsilon
ikappaB kinase isoform X1.
    
 0.476
Q4H3C1_CIOIN
IkappaB kinase.
    
 0.476
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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