STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2XZ35_CIOINSAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (423 aa)    
Predicted Functional Partners:
F6YCY6_CIOIN
Methyltransferase-like protein; Belongs to the methyltransferase superfamily. METL family.
 
 
  
 0.883
LOC100181090
Methyltransferase-like protein; Belongs to the methyltransferase superfamily. METL family.
 
 
  
 0.733
F6TAD8_CIOIN
CBF domain-containing protein.
   
 
 0.729
H2XS95_CIOIN
Uncharacterized protein.
   
 
 0.695
LOC100185650
Phosphoglucomutase-2.
    
 0.691
LOC100183007
Probable rRNA-processing protein EBP2 isoform X1.
   
 
 0.690
LOC100179457
methionyl-tRNA formyltransferase, mitochondrial.
  
  
 0.688
LOC100186454
Uncharacterized protein.
   
    0.682
ppan
Brix domain-containing protein.
   
   0.680
LOC100180799
60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.
  
 
 0.671
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.