STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2XZ64_CIOINUncharacterized protein. (211 aa)    
Predicted Functional Partners:
LOC494392
Uncharacterized protein LOC494392.
    
 0.954
LOC100175879
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
  0.697
ckn1
Cockayne syndrome 1 homolog.
    
 0.688
H2Y1F1_CIOIN
WD_REPEATS_REGION domain-containing protein.
     
 0.655
H2XZE5_CIOIN
WD_REPEATS_REGION domain-containing protein.
     
  0.651
LOC104265547
Uncharacterized protein LOC104265547 isoform X1.
    
  0.643
F6TSM0_CIOIN
WD_REPEATS_REGION domain-containing protein.
     
  0.639
H2XVM3_CIOIN
Uncharacterized protein.
    
 0.572
F6U4L6_CIOIN
Uncharacterized protein.
    
 0.568
LOC100176203
Uncharacterized protein.
     
  0.540
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.