ci-zf(c2h2)-87 protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ci-zf(c2h2)-87

Zinc finger protein LOC723797 isoform X1. (1251 aa)

Predicted Functional Partners:

LOC104265886

0.855

F6WQW9_CIOIN

0.531

LOC100180904

0.509

Scmh1

0.478

F6UZR0_CIOIN

0.471

LOC100184556

0.448

H2XLG0_CIOIN

0.411

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6UZR0_CIOIN	F6WQW9_CIOIN	ENSCINP00000026260	ENSCINP00000016333	VEFS-Box domain-containing protein.	Uncharacterized protein.	0.997
F6UZR0_CIOIN	H2XLG0_CIOIN	ENSCINP00000026260	ENSCINP00000030492	VEFS-Box domain-containing protein.	RING-type domain-containing protein.	0.886
F6UZR0_CIOIN	LOC100180904	ENSCINP00000026260	ENSCINP00000014284	VEFS-Box domain-containing protein.	Polycomb protein eed.	0.998
F6UZR0_CIOIN	LOC104265886	ENSCINP00000026260	ENSCINP00000016261	VEFS-Box domain-containing protein.	Histone-binding protein RBBP4.	0.998
F6UZR0_CIOIN	Scmh1	ENSCINP00000026260	ENSCINP00000025543	VEFS-Box domain-containing protein.	SAM domain-containing protein.	0.731
F6UZR0_CIOIN	ci-zf(c2h2)-87	ENSCINP00000026260	ENSCINP00000035043	VEFS-Box domain-containing protein.	Zinc finger protein LOC723797 isoform X1.	0.471
F6WQW9_CIOIN	F6UZR0_CIOIN	ENSCINP00000016333	ENSCINP00000026260	Uncharacterized protein.	VEFS-Box domain-containing protein.	0.997
F6WQW9_CIOIN	H2XLG0_CIOIN	ENSCINP00000016333	ENSCINP00000030492	Uncharacterized protein.	RING-type domain-containing protein.	0.907
F6WQW9_CIOIN	LOC100180904	ENSCINP00000016333	ENSCINP00000014284	Uncharacterized protein.	Polycomb protein eed.	0.999
F6WQW9_CIOIN	LOC104265886	ENSCINP00000016333	ENSCINP00000016261	Uncharacterized protein.	Histone-binding protein RBBP4.	0.989
F6WQW9_CIOIN	Scmh1	ENSCINP00000016333	ENSCINP00000025543	Uncharacterized protein.	SAM domain-containing protein.	0.815
F6WQW9_CIOIN	ci-zf(c2h2)-87	ENSCINP00000016333	ENSCINP00000035043	Uncharacterized protein.	Zinc finger protein LOC723797 isoform X1.	0.531
H2XLG0_CIOIN	F6UZR0_CIOIN	ENSCINP00000030492	ENSCINP00000026260	RING-type domain-containing protein.	VEFS-Box domain-containing protein.	0.886
H2XLG0_CIOIN	F6WQW9_CIOIN	ENSCINP00000030492	ENSCINP00000016333	RING-type domain-containing protein.	Uncharacterized protein.	0.907
H2XLG0_CIOIN	LOC100180904	ENSCINP00000030492	ENSCINP00000014284	RING-type domain-containing protein.	Polycomb protein eed.	0.886
H2XLG0_CIOIN	LOC100184556	ENSCINP00000030492	ENSCINP00000022803	RING-type domain-containing protein.	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.408
H2XLG0_CIOIN	LOC104265886	ENSCINP00000030492	ENSCINP00000016261	RING-type domain-containing protein.	Histone-binding protein RBBP4.	0.827
H2XLG0_CIOIN	Scmh1	ENSCINP00000030492	ENSCINP00000025543	RING-type domain-containing protein.	SAM domain-containing protein.	0.898
H2XLG0_CIOIN	ci-zf(c2h2)-87	ENSCINP00000030492	ENSCINP00000035043	RING-type domain-containing protein.	Zinc finger protein LOC723797 isoform X1.	0.411
LOC100180904	F6UZR0_CIOIN	ENSCINP00000014284	ENSCINP00000026260	Polycomb protein eed.	VEFS-Box domain-containing protein.	0.998