STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2Y010_CIOINUSP domain-containing protein. (225 aa)    
Predicted Functional Partners:
Zf(ubp)-4
Uncharacterized protein.
 
     0.929
LOC100175824
116 kDa U5 small nuclear ribonucleoprotein component.
   
 0.870
F6R6C4_CIOIN
Uncharacterized protein.
    
 0.818
LOC100185829
Uncharacterized protein.
   
 0.788
LOC100183839
U5 small nuclear ribonucleoprotein 40 kDa protein.
   
  0.742
LOC100182908
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.725
F6TBF9_CIOIN
Uncharacterized protein.
   
 0.680
F6XM64_CIOIN
NOSIC domain-containing protein.
    
 0.666
LOC100176856
Uncharacterized protein.
    
 0.643
H2XW02_CIOIN
Small nuclear ribonucleoprotein Sm D2.
    
 0.635
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.