STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2Y0X3_CIOINMFS domain-containing protein. (144 aa)    
Predicted Functional Partners:
LOC100182780
Ras-related protein Rab-3.
   
 
 0.666
Syt1
Uncharacterized protein.
     
 0.660
LOC100176945
Protein unc-13 homolog B-like.
     
 0.630
F7A7X6_CIOIN
V-SNARE coiled-coil homology domain-containing protein.
     
 0.598
F6W2N4_CIOIN
Uncharacterized protein.
     
 0.596
F6R9A6_CIOIN
Uncharacterized protein.
     
 0.596
H2XJZ0_CIOIN
Guanylate kinase-like domain-containing protein.
     
 0.596
F6U959_CIOIN
Uncharacterized protein.
     
 0.578
F6QID5_CIOIN
Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.
     
 0.571
LOC100187429
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
     
 0.510
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.