LOC100185829 protein (Ciona intestinalis) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

LOC100185829

Uncharacterized protein. (486 aa)

Predicted Functional Partners:

LOC100176960

0.999

LOC100183839

0.998

LOC100176856

0.998

LOC100175824

0.998

LOC100182908

0.996

F6TBF9_CIOIN

0.993

H2XW02_CIOIN

0.993

F6R6C4_CIOIN

0.992

LOC100178781

0.992

H2XKA1_CIOIN

0.992

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6R6C4_CIOIN	F6TBF9_CIOIN	ENSCINP00000018370	ENSCINP00000006800	Uncharacterized protein.	Uncharacterized protein.	0.996
F6R6C4_CIOIN	H2XKA1_CIOIN	ENSCINP00000018370	ENSCINP00000030083	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.991
F6R6C4_CIOIN	H2XW02_CIOIN	ENSCINP00000018370	ENSCINP00000033836	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.991
F6R6C4_CIOIN	LOC100175824	ENSCINP00000018370	ENSCINP00000019043	Uncharacterized protein.	116 kDa U5 small nuclear ribonucleoprotein component.	0.996
F6R6C4_CIOIN	LOC100176856	ENSCINP00000018370	ENSCINP00000017945	Uncharacterized protein.	Uncharacterized protein.	0.997
F6R6C4_CIOIN	LOC100176960	ENSCINP00000018370	ENSCINP00000010465	Uncharacterized protein.	Uncharacterized protein.	0.992
F6R6C4_CIOIN	LOC100178781	ENSCINP00000018370	ENSCINP00000028023	Uncharacterized protein.	Small nuclear ribonucleoprotein-associated protein B-like.	0.989
F6R6C4_CIOIN	LOC100182908	ENSCINP00000018370	ENSCINP00000003866	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.946
F6R6C4_CIOIN	LOC100183839	ENSCINP00000018370	ENSCINP00000013358	Uncharacterized protein.	U5 small nuclear ribonucleoprotein 40 kDa protein.	0.861
F6R6C4_CIOIN	LOC100185829	ENSCINP00000018370	ENSCINP00000035652	Uncharacterized protein.	Uncharacterized protein.	0.992
F6TBF9_CIOIN	F6R6C4_CIOIN	ENSCINP00000006800	ENSCINP00000018370	Uncharacterized protein.	Uncharacterized protein.	0.996
F6TBF9_CIOIN	H2XKA1_CIOIN	ENSCINP00000006800	ENSCINP00000030083	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.959
F6TBF9_CIOIN	H2XW02_CIOIN	ENSCINP00000006800	ENSCINP00000033836	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.982
F6TBF9_CIOIN	LOC100175824	ENSCINP00000006800	ENSCINP00000019043	Uncharacterized protein.	116 kDa U5 small nuclear ribonucleoprotein component.	0.991
F6TBF9_CIOIN	LOC100176856	ENSCINP00000006800	ENSCINP00000017945	Uncharacterized protein.	Uncharacterized protein.	0.997
F6TBF9_CIOIN	LOC100176960	ENSCINP00000006800	ENSCINP00000010465	Uncharacterized protein.	Uncharacterized protein.	0.992
F6TBF9_CIOIN	LOC100178781	ENSCINP00000006800	ENSCINP00000028023	Uncharacterized protein.	Small nuclear ribonucleoprotein-associated protein B-like.	0.939
F6TBF9_CIOIN	LOC100182908	ENSCINP00000006800	ENSCINP00000003866	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.931
F6TBF9_CIOIN	LOC100183839	ENSCINP00000006800	ENSCINP00000013358	Uncharacterized protein.	U5 small nuclear ribonucleoprotein 40 kDa protein.	0.861
F6TBF9_CIOIN	LOC100185829	ENSCINP00000006800	ENSCINP00000035652	Uncharacterized protein.	Uncharacterized protein.	0.993