STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100185836ADP-ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family. (196 aa)    
Predicted Functional Partners:
LOC104266814
ADP-ribosylation factor 6-like; Belongs to the small GTPase superfamily. Arf family.
  
  
 
0.903
H2XVQ2_CIOIN
Uncharacterized protein.
    
 0.853
F6W510_CIOIN
Uncharacterized protein.
    
 0.782
LOC100187303
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 0.770
H2XNI5_CIOIN
Ig-like domain-containing protein.
   
 0.739
F6UN86_CIOIN
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.
   
 0.718
gla1
Uncharacterized protein LOC780869.
   
 0.718
F6TBG7_CIOIN
Uncharacterized protein.
    
 0.660
H2XX22_CIOIN
Uncharacterized protein.
    
 0.646
F6YRM0_CIOIN
Rab-GAP TBC domain-containing protein.
     
 0.615
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.