STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2Y2E1_CIOINUncharacterized protein. (95 aa)    
Predicted Functional Partners:
F6RW32_CIOIN
SAP domain-containing protein.
   
 0.761
F6YBL5_CIOIN
RRM domain-containing protein.
   
 0.713
LOC100182155
Uncharacterized protein.
   
 0.708
LOC100181403
Serine/arginine repetitive matrix protein 1.
   
 0.666
H2XUZ2_CIOIN
Uncharacterized protein.
   
 0.586
F6T7M7_CIOIN
Uncharacterized protein.
    
 0.560
F6VCT2_CIOIN
Uncharacterized protein.
   
 0.550
F6XF93_CIOIN
Uncharacterized protein.
   
 0.532
LOC100179085
Enhancer of rudimentary homolog; May have a role in the cell cycle.
   
 
 0.522
F7B819_CIOIN
Uncharacterized protein.
    
 0.519
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.