STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100177275PKS_ER domain-containing protein. (365 aa)    
Predicted Functional Partners:
F6WBF5_CIOIN
Xylose isomerase.
     
 0.927
F6ZRC6_CIOIN
Aldo_ket_red domain-containing protein.
  
 0.919
LOC100176226
Aldose reductase-like.
  
 0.919
H2XUY3_CIOIN
Aldo_ket_red domain-containing protein.
  
 0.919
F6YLI3_CIOIN
Phosphotransferase.
   
 
 0.915
H2XKD1_CIOIN
Phosphotransferase.
   
 
 0.915
H2XUD0_CIOIN
Phosphotransferase.
   
 
 0.915
F7BN93_CIOIN
PfkB domain-containing protein.
   
 
 0.911
H2XU42_CIOIN
Uncharacterized protein.
   
 
 0.905
LOC100184593
Sorbitol dehydrogenase.
  
  
 
0.904
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.