STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2Y2R4_CIOINUncharacterized protein. (167 aa)    
Predicted Functional Partners:
F6RJ81_CIOIN
ANK_REP_REGION domain-containing protein.
 
      0.900
rel1
Rel1 protein isoform X1.
   
 0.509
Q4H3C1_CIOIN
IkappaB kinase.
    
 0.501
F6WRI9_CIOIN
HECT domain-containing protein.
   
  0.453
H2XLP4_CIOIN
Uncharacterized protein.
   
  0.453
H2XPT0_CIOIN
Uncharacterized protein.
   
  0.453
F6ZPL5_CIOIN
BAT2_N domain-containing protein.
   
 
 0.442
LOC100182630
Intraflagellar transport protein 81 homolog.
    
 0.425
F6XVF3_CIOIN
Serine/threonine-protein phosphatase.
    
 0.422
F6XN27_CIOIN
Uncharacterized protein.
   
   0.407
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.