H2Y3L1_CIOIN protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H2Y3L1_CIOIN

Uncharacterized protein. (181 aa)

Predicted Functional Partners:

zf(c2h2)-124

0.522

F6ZNG2_CIOIN

0.515

H2XLP9_CIOIN

0.507

Foxp

0.471

F6TBZ1_CIOIN

0.465

F6R982_CIOIN

0.420

LOC100184077

0.416

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6R982_CIOIN	H2Y3L1_CIOIN	ENSCINP00000009975	ENSCINP00000036496	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.420
F6TBZ1_CIOIN	F6ZNG2_CIOIN	ENSCINP00000010043	ENSCINP00000006941	Uncharacterized protein.	Uncharacterized protein.	0.482
F6TBZ1_CIOIN	H2Y3L1_CIOIN	ENSCINP00000010043	ENSCINP00000036496	Uncharacterized protein.	Uncharacterized protein.	0.465
F6ZNG2_CIOIN	F6TBZ1_CIOIN	ENSCINP00000006941	ENSCINP00000010043	Uncharacterized protein.	Uncharacterized protein.	0.482
F6ZNG2_CIOIN	H2Y3L1_CIOIN	ENSCINP00000006941	ENSCINP00000036496	Uncharacterized protein.	Uncharacterized protein.	0.515
F6ZNG2_CIOIN	zf(c2h2)-124	ENSCINP00000006941	ENSCINP00000034387	Uncharacterized protein.	Uncharacterized protein.	0.472
Foxp	H2Y3L1_CIOIN	ENSCINP00000022650	ENSCINP00000036496	Fork-head domain-containing protein.	Uncharacterized protein.	0.471
H2XLP9_CIOIN	H2Y3L1_CIOIN	ENSCINP00000030581	ENSCINP00000036496	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Uncharacterized protein.	0.507
H2Y3L1_CIOIN	F6R982_CIOIN	ENSCINP00000036496	ENSCINP00000009975	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.420
H2Y3L1_CIOIN	F6TBZ1_CIOIN	ENSCINP00000036496	ENSCINP00000010043	Uncharacterized protein.	Uncharacterized protein.	0.465
H2Y3L1_CIOIN	F6ZNG2_CIOIN	ENSCINP00000036496	ENSCINP00000006941	Uncharacterized protein.	Uncharacterized protein.	0.515
H2Y3L1_CIOIN	Foxp	ENSCINP00000036496	ENSCINP00000022650	Uncharacterized protein.	Fork-head domain-containing protein.	0.471
H2Y3L1_CIOIN	H2XLP9_CIOIN	ENSCINP00000036496	ENSCINP00000030581	Uncharacterized protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.507
H2Y3L1_CIOIN	LOC100184077	ENSCINP00000036496	ENSCINP00000032632	Uncharacterized protein.	Transcriptional repressor p66-beta isoform X1.	0.416
H2Y3L1_CIOIN	zf(c2h2)-124	ENSCINP00000036496	ENSCINP00000034387	Uncharacterized protein.	Uncharacterized protein.	0.522
LOC100184077	H2Y3L1_CIOIN	ENSCINP00000032632	ENSCINP00000036496	Transcriptional repressor p66-beta isoform X1.	Uncharacterized protein.	0.416
zf(c2h2)-124	F6ZNG2_CIOIN	ENSCINP00000034387	ENSCINP00000006941	Uncharacterized protein.	Uncharacterized protein.	0.472
zf(c2h2)-124	H2Y3L1_CIOIN	ENSCINP00000034387	ENSCINP00000036496	Uncharacterized protein.	Uncharacterized protein.	0.522