STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC445593Sushi domain-containing protein. (909 aa)    
Predicted Functional Partners:
th
BH4_AAA_HYDROXYL_2 domain-containing protein.
     
 0.909
LOC100184965
Aspartate aminotransferase.
    
 0.906
LOC100179315
Aspartate aminotransferase.
     
 0.904
LOC100183818
EGF_CA domain-containing protein.
  
  
 
0.901
F7B882_CIOIN
Uncharacterized protein.
  
  
 
0.901
LOC100183684
Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.
     
  0.900
hdcl
Uncharacterized protein.
     
  0.900
F6R2I4_CIOIN
Tyrosinase_Cu-bd domain-containing protein.
     
  0.900
LOC100182530
aromatic-L-amino-acid decarboxylase-like.
     
  0.900
F6QPY3_CIOIN
Tyrosinase_Cu-bd domain-containing protein.
     
  0.900
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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