STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3XR62_BRAFLDiphthami_syn_2 domain-containing protein. (240 aa)    
Predicted Functional Partners:
C3YA13_BRAFL
TP_methylase domain-containing protein.
  
 
 0.966
C3Z671_BRAFL
Tr-type G domain-containing protein.
    
 0.701
C3Z672_BRAFL
EFG_C domain-containing protein.
    
 0.701
C3YR53_BRAFL
Tr-type G domain-containing protein.
    
 0.682
C3YXT2_BRAFL
Hydin_ADK domain-containing protein.
      
 0.574
C3Y1W0_BRAFL
Tr-type G domain-containing protein.
    
 0.560
C3Z382_BRAFL
Tr-type G domain-containing protein.
    
 0.560
C3ZA07_BRAFL
Aamy_C domain-containing protein.
    
 0.560
C3ZDC2_BRAFL
Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.
    
 0.560
C3ZR10_BRAFL
Tr-type G domain-containing protein.
    
 0.560
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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