STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3XRA2_BRAFLDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (125 aa)    
Predicted Functional Partners:
C3XPX8_BRAFL
RPOL4c domain-containing protein.
   
 0.999
C3Y5U9_BRAFL
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.999
C3Y645_BRAFL
Uncharacterized protein.
   
 0.999
C3YH75_BRAFL
Uncharacterized protein.
   
 0.999
C3YY41_BRAFL
RNA_pol_L_2 domain-containing protein.
   
 0.999
C3Z918_BRAFL
RPOLD domain-containing protein.
   
 0.999
C3ZLN6_BRAFL
Uncharacterized protein.
   
 0.999
C3ZQF0_BRAFL
Uncharacterized protein.
   
 0.999
C3ZQZ0_BRAFL
Uncharacterized protein.
   
 0.999
C3YQI6_BRAFL
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.998
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.