STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3XS65_BRAFLUncharacterized protein. (2181 aa)    
Predicted Functional Partners:
C3YK34_BRAFL
Uncharacterized protein.
   
 
 0.973
C3Z3R9_BRAFL
Uncharacterized protein.
    
 0.969
C3Z3R8_BRAFL
Uncharacterized protein.
    
 0.964
C3Y8J4_BRAFL
Uncharacterized protein.
   
 0.906
C3XVP6_BRAFL
Ribosomal_L6e_N domain-containing protein.
    
   0.832
C3ZEN8_BRAFL
Ribosomal_L2_C domain-containing protein.
    
   0.782
C3YD43_BRAFL
Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.
    
 
 0.733
C3ZL87_BRAFL
Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.
    
   0.729
C3Y4R0_BRAFL
Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.
    
 
 0.706
C3XRV1_BRAFL
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
   
 0.685
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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