STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3XU94_BRAFLTPR_REGION domain-containing protein. (423 aa)    
Predicted Functional Partners:
C3YJ03_BRAFL
Uncharacterized protein.
   
 0.960
C3XZ88_BRAFL
Uncharacterized protein.
  
 
 0.943
C3Y4R0_BRAFL
Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.
   
 
 0.929
C3ZL87_BRAFL
Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.
  
 
 0.927
C3YD43_BRAFL
Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.
   
 
 0.918
C3XUM8_BRAFL
Glutamine amidotransferase type-2 domain-containing protein.
  
 
 0.917
C3YTT3_BRAFL
Inosine triphosphate pyrophosphatase; Pyrophosphatase that hydrolyzes non-canonical purine nucleotides such as inosine triphosphate (ITP), deoxyinosine triphosphate (dITP) or xanthosine 5'-triphosphate (XTP) to their respective monophosphate derivatives. The enzyme does not distinguish between the deoxy- and ribose forms. Probably excludes non-canonical purines from RNA and DNA precursor pools, thus preventing their incorporation into RNA and DNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.
   
 
 0.917
C3ZMK0_BRAFL
Uncharacterized protein.
  
 
 0.916
C3ZTF1_BRAFL
Uncharacterized protein.
   
 
 0.914
C3ZH65_BRAFL
Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.
   
 
 0.906
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.