C3XZ33_BRAFL protein (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C3XZ33_BRAFL

Aldo_ket_red domain-containing protein. (334 aa)

Predicted Functional Partners:

C3Y6F0_BRAFL

0.830

C3XRH9_BRAFL

0.503

C3YVL3_BRAFL

0.488

C3Y917_BRAFL

0.447

C3ZDE1_BRAFL

0.447

C3Z2H1_BRAFL

0.439

C3ZTE0_BRAFL

0.436

C3YJ29_BRAFL

0.410

C3YJ30_BRAFL

0.410

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XRH9_BRAFL	C3XZ33_BRAFL	C3XRH9	C3XZ33	Nucleoporin_C domain-containing protein.	Aldo_ket_red domain-containing protein.	0.503
C3XRH9_BRAFL	C3Y6F0_BRAFL	C3XRH9	C3Y6F0	Nucleoporin_C domain-containing protein.	Uncharacterized protein.	0.999
C3XRH9_BRAFL	C3Y917_BRAFL	C3XRH9	C3Y917	Nucleoporin_C domain-containing protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.999
C3XRH9_BRAFL	C3YJ29_BRAFL	C3XRH9	C3YJ29	Nucleoporin_C domain-containing protein.	Uncharacterized protein.	0.989
C3XRH9_BRAFL	C3YJ30_BRAFL	C3XRH9	C3YJ30	Nucleoporin_C domain-containing protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.995
C3XRH9_BRAFL	C3YVL3_BRAFL	C3XRH9	C3YVL3	Nucleoporin_C domain-containing protein.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.999
C3XRH9_BRAFL	C3ZDE1_BRAFL	C3XRH9	C3ZDE1	Nucleoporin_C domain-containing protein.	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	0.999
C3XZ33_BRAFL	C3XRH9_BRAFL	C3XZ33	C3XRH9	Aldo_ket_red domain-containing protein.	Nucleoporin_C domain-containing protein.	0.503
C3XZ33_BRAFL	C3Y6F0_BRAFL	C3XZ33	C3Y6F0	Aldo_ket_red domain-containing protein.	Uncharacterized protein.	0.830
C3XZ33_BRAFL	C3Y917_BRAFL	C3XZ33	C3Y917	Aldo_ket_red domain-containing protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.447
C3XZ33_BRAFL	C3YJ29_BRAFL	C3XZ33	C3YJ29	Aldo_ket_red domain-containing protein.	Uncharacterized protein.	0.410
C3XZ33_BRAFL	C3YJ30_BRAFL	C3XZ33	C3YJ30	Aldo_ket_red domain-containing protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.410
C3XZ33_BRAFL	C3YVL3_BRAFL	C3XZ33	C3YVL3	Aldo_ket_red domain-containing protein.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.488
C3XZ33_BRAFL	C3Z2H1_BRAFL	C3XZ33	C3Z2H1	Aldo_ket_red domain-containing protein.	Uncharacterized protein.	0.439
C3XZ33_BRAFL	C3ZDE1_BRAFL	C3XZ33	C3ZDE1	Aldo_ket_red domain-containing protein.	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	0.447
C3XZ33_BRAFL	C3ZTE0_BRAFL	C3XZ33	C3ZTE0	Aldo_ket_red domain-containing protein.	Ion_trans domain-containing protein; Belongs to the potassium channel family.	0.436
C3Y6F0_BRAFL	C3XRH9_BRAFL	C3Y6F0	C3XRH9	Uncharacterized protein.	Nucleoporin_C domain-containing protein.	0.999
C3Y6F0_BRAFL	C3XZ33_BRAFL	C3Y6F0	C3XZ33	Uncharacterized protein.	Aldo_ket_red domain-containing protein.	0.830
C3Y6F0_BRAFL	C3Y917_BRAFL	C3Y6F0	C3Y917	Uncharacterized protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.999
C3Y6F0_BRAFL	C3YJ29_BRAFL	C3Y6F0	C3YJ29	Uncharacterized protein.	Uncharacterized protein.	0.999