C3XZR9_BRAFL protein (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C3XZR9_BRAFL

Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (335 aa)

Predicted Functional Partners:

C3Z725_BRAFL

0.588

C3ZXL0_BRAFL

0.583

C3Z484_BRAFL

0.556

C3YPF5_BRAFL

0.554

C3Y9K9_BRAFL

0.538

C3ZE87_BRAFL

0.536

C3ZNP8_BRAFL

0.534

C3ZPE4_BRAFL

0.533

C3Z501_BRAFL

0.522

C3Z500_BRAFL

0.518

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XZR9_BRAFL	C3Y9K9_BRAFL	C3XZR9	C3Y9K9	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.538
C3XZR9_BRAFL	C3YPF5_BRAFL	C3XZR9	C3YPF5	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.554
C3XZR9_BRAFL	C3Z484_BRAFL	C3XZR9	C3Z484	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Mitogen-activated protein kinase.	0.556
C3XZR9_BRAFL	C3Z500_BRAFL	C3XZR9	C3Z500	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.518
C3XZR9_BRAFL	C3Z501_BRAFL	C3XZR9	C3Z501	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.522
C3XZR9_BRAFL	C3Z725_BRAFL	C3XZR9	C3Z725	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	PPM-type phosphatase domain-containing protein.	0.588
C3XZR9_BRAFL	C3ZE87_BRAFL	C3XZR9	C3ZE87	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.536
C3XZR9_BRAFL	C3ZNP8_BRAFL	C3XZR9	C3ZNP8	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.534
C3XZR9_BRAFL	C3ZPE4_BRAFL	C3XZR9	C3ZPE4	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.533
C3XZR9_BRAFL	C3ZXL0_BRAFL	C3XZR9	C3ZXL0	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.583
C3Y9K9_BRAFL	C3XZR9_BRAFL	C3Y9K9	C3XZR9	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.538
C3Y9K9_BRAFL	C3YPF5_BRAFL	C3Y9K9	C3YPF5	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.491
C3Y9K9_BRAFL	C3Z725_BRAFL	C3Y9K9	C3Z725	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	PPM-type phosphatase domain-containing protein.	0.454
C3Y9K9_BRAFL	C3ZNP8_BRAFL	C3Y9K9	C3ZNP8	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.970
C3Y9K9_BRAFL	C3ZPE4_BRAFL	C3Y9K9	C3ZPE4	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.768
C3YPF5_BRAFL	C3XZR9_BRAFL	C3YPF5	C3XZR9	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.554
C3YPF5_BRAFL	C3Y9K9_BRAFL	C3YPF5	C3Y9K9	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.491
C3YPF5_BRAFL	C3Z725_BRAFL	C3YPF5	C3Z725	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	PPM-type phosphatase domain-containing protein.	0.727
C3YPF5_BRAFL	C3ZNP8_BRAFL	C3YPF5	C3ZNP8	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Protein kinase domain-containing protein.	0.979
C3YPF5_BRAFL	C3ZPE4_BRAFL	C3YPF5	C3ZPE4	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Protein kinase domain-containing protein.	0.544