STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3Y0B3_BRAFLRING-type domain-containing protein. (548 aa)    
Predicted Functional Partners:
C3YFB1_BRAFL
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
    
 0.981
C3Z4B6_BRAFL
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
   
 0.978
C3YH30_BRAFL
Uncharacterized protein.
   
 0.945
C3Z964_BRAFL
Uncharacterized protein.
   
 0.915
C3Z2I5_BRAFL
Uncharacterized protein.
   
 0.913
C3Z9K6_BRAFL
PRKCSH domain-containing protein.
   
 0.913
C3YFD1_BRAFL
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
 
      0.817
C3YTH4_BRAFL
Uncharacterized protein; Belongs to the AAA ATPase family.
    
 0.778
C3YH01_BRAFL
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
 
    
 0.758
C3Z9X8_BRAFL
AAA domain-containing protein.
    
 0.753
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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