C3Y0K1_BRAFL protein (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C3Y0K1_BRAFL

WD_REPEATS_REGION domain-containing protein. (1228 aa)

Predicted Functional Partners:

C3ZBS1_BRAFL

0.958

C3XUM4_BRAFL

0.956

C3XZQ3_BRAFL

0.954

C3YYS4_BRAFL

0.950

C3Y7Q4_BRAFL

0.948

C3YYL1_BRAFL

0.948

C3YB28_BRAFL

0.940

C3ZWK2_BRAFL

0.931

C3ZXZ1_BRAFL

0.931

C3Y2C6_BRAFL

0.907

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XUM4_BRAFL	C3XZQ3_BRAFL	C3XUM4	C3XZQ3	Uncharacterized protein.	Slu7 domain-containing protein.	0.987
C3XUM4_BRAFL	C3Y0K1_BRAFL	C3XUM4	C3Y0K1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.956
C3XUM4_BRAFL	C3Y7Q4_BRAFL	C3XUM4	C3Y7Q4	Uncharacterized protein.	Uncharacterized protein.	0.988
C3XUM4_BRAFL	C3YB28_BRAFL	C3XUM4	C3YB28	Uncharacterized protein.	Cwf21 domain-containing protein.	0.977
C3XUM4_BRAFL	C3YYL1_BRAFL	C3XUM4	C3YYL1	Uncharacterized protein.	Cir_N domain-containing protein.	0.980
C3XUM4_BRAFL	C3YYS4_BRAFL	C3XUM4	C3YYS4	Uncharacterized protein.	MI domain-containing protein.	0.980
C3XUM4_BRAFL	C3ZBS1_BRAFL	C3XUM4	C3ZBS1	Uncharacterized protein.	Uncharacterized protein.	0.987
C3XUM4_BRAFL	C3ZWK2_BRAFL	C3XUM4	C3ZWK2	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.981
C3XUM4_BRAFL	C3ZXZ1_BRAFL	C3XUM4	C3ZXZ1	Uncharacterized protein.	Uncharacterized protein.	0.976
C3XZQ3_BRAFL	C3XUM4_BRAFL	C3XZQ3	C3XUM4	Slu7 domain-containing protein.	Uncharacterized protein.	0.987
C3XZQ3_BRAFL	C3Y0K1_BRAFL	C3XZQ3	C3Y0K1	Slu7 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.954
C3XZQ3_BRAFL	C3Y2C6_BRAFL	C3XZQ3	C3Y2C6	Slu7 domain-containing protein.	MIF4G domain-containing protein.	0.645
C3XZQ3_BRAFL	C3Y7Q4_BRAFL	C3XZQ3	C3Y7Q4	Slu7 domain-containing protein.	Uncharacterized protein.	0.925
C3XZQ3_BRAFL	C3YB28_BRAFL	C3XZQ3	C3YB28	Slu7 domain-containing protein.	Cwf21 domain-containing protein.	0.968
C3XZQ3_BRAFL	C3YYL1_BRAFL	C3XZQ3	C3YYL1	Slu7 domain-containing protein.	Cir_N domain-containing protein.	0.937
C3XZQ3_BRAFL	C3YYS4_BRAFL	C3XZQ3	C3YYS4	Slu7 domain-containing protein.	MI domain-containing protein.	0.992
C3XZQ3_BRAFL	C3ZBS1_BRAFL	C3XZQ3	C3ZBS1	Slu7 domain-containing protein.	Uncharacterized protein.	0.990
C3XZQ3_BRAFL	C3ZWK2_BRAFL	C3XZQ3	C3ZWK2	Slu7 domain-containing protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.826
C3XZQ3_BRAFL	C3ZXZ1_BRAFL	C3XZQ3	C3ZXZ1	Slu7 domain-containing protein.	Uncharacterized protein.	0.625
C3Y0K1_BRAFL	C3XUM4_BRAFL	C3Y0K1	C3XUM4	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.956