STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3Y0K5_BRAFLRAB3GAP2_N domain-containing protein. (262 aa)    
Predicted Functional Partners:
C3Z095_BRAFL
Uncharacterized protein.
   
 0.971
C3Y0K7_BRAFL
Uncharacterized protein.
 
     0.942
C3ZHM7_BRAFL
Uncharacterized protein.
     
 0.685
rab-GDI
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
     
 0.605
C3YZ95_BRAFL
Uncharacterized protein.
   
 
 0.569
C3ZEE0_BRAFL
Uncharacterized protein.
     
 0.544
C3YF60_BRAFL
Uncharacterized protein.
   
 
  0.526
C3Y0K6_BRAFL
Uncharacterized protein.
  
     0.508
C3XTX4_BRAFL
Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.
   
 
  0.505
C3Z5H7_BRAFL
Uncharacterized protein.
   
 
  0.459
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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