C3Y179_BRAFL protein (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C3Y179_BRAFL

TYR_PHOSPHATASE_2 domain-containing protein. (154 aa)

Predicted Functional Partners:

C3Y7K0_BRAFL

0.571

C3YDJ3_BRAFL

0.571

C3XWF2_BRAFL

0.529

C3XZV1_BRAFL

0.529

C3YIF0_BRAFL

0.529

C3YYJ5_BRAFL

0.529

C3ZJ75_BRAFL

0.529

C3XQE9_BRAFL

0.517

C3Y135_BRAFL

0.517

C3Z917_BRAFL

0.517

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XQE9_BRAFL	C3XWF2_BRAFL	C3XQE9	C3XWF2	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	PDZ domain-containing protein.	0.779
C3XQE9_BRAFL	C3XZV1_BRAFL	C3XQE9	C3XZV1	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	PDZ domain-containing protein.	0.779
C3XQE9_BRAFL	C3Y179_BRAFL	C3XQE9	C3Y179	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	TYR_PHOSPHATASE_2 domain-containing protein.	0.517
C3XQE9_BRAFL	C3Y7K0_BRAFL	C3XQE9	C3Y7K0	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Wee1-like protein kinase.	0.834
C3XQE9_BRAFL	C3YDJ3_BRAFL	C3XQE9	C3YDJ3	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.821
C3XQE9_BRAFL	C3YIF0_BRAFL	C3XQE9	C3YIF0	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.808
C3XQE9_BRAFL	C3YYJ5_BRAFL	C3XQE9	C3YYJ5	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.808
C3XQE9_BRAFL	C3ZJ75_BRAFL	C3XQE9	C3ZJ75	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	WD_REPEATS_REGION domain-containing protein.	0.882
C3XWF2_BRAFL	C3XQE9_BRAFL	C3XWF2	C3XQE9	PDZ domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.779
C3XWF2_BRAFL	C3Y135_BRAFL	C3XWF2	C3Y135	PDZ domain-containing protein.	Protein kinase domain-containing protein.	0.779
C3XWF2_BRAFL	C3Y179_BRAFL	C3XWF2	C3Y179	PDZ domain-containing protein.	TYR_PHOSPHATASE_2 domain-containing protein.	0.529
C3XWF2_BRAFL	C3Z917_BRAFL	C3XWF2	C3Z917	PDZ domain-containing protein.	Protein kinase domain-containing protein.	0.760
C3XZV1_BRAFL	C3XQE9_BRAFL	C3XZV1	C3XQE9	PDZ domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.779
C3XZV1_BRAFL	C3Y135_BRAFL	C3XZV1	C3Y135	PDZ domain-containing protein.	Protein kinase domain-containing protein.	0.779
C3XZV1_BRAFL	C3Y179_BRAFL	C3XZV1	C3Y179	PDZ domain-containing protein.	TYR_PHOSPHATASE_2 domain-containing protein.	0.529
C3XZV1_BRAFL	C3Z917_BRAFL	C3XZV1	C3Z917	PDZ domain-containing protein.	Protein kinase domain-containing protein.	0.760
C3Y135_BRAFL	C3XWF2_BRAFL	C3Y135	C3XWF2	Protein kinase domain-containing protein.	PDZ domain-containing protein.	0.779
C3Y135_BRAFL	C3XZV1_BRAFL	C3Y135	C3XZV1	Protein kinase domain-containing protein.	PDZ domain-containing protein.	0.779
C3Y135_BRAFL	C3Y179_BRAFL	C3Y135	C3Y179	Protein kinase domain-containing protein.	TYR_PHOSPHATASE_2 domain-containing protein.	0.517
C3Y135_BRAFL	C3Y7K0_BRAFL	C3Y135	C3Y7K0	Protein kinase domain-containing protein.	Wee1-like protein kinase.	0.834