STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3Y8M0_BRAFLOTU domain-containing protein. (247 aa)    
Predicted Functional Partners:
MYSM1
Histone H2A deubiquitinase MYSM1; Metalloprotease that specifically deubiquitinates monoubiquitinated histone H2A, a specific tag for epigenetic transcriptional repression, thereby acting as a coactivator. Preferentially deubiquitinates monoubiquitinated H2A in hyperacetylated nucleosomes. Deubiquitination of histone H2A leads to facilitate the phosphorylation and dissociation of histone H1 from the nucleosome. Acts as a coactivator by participating in the initiation and elongation steps of androgen receptor (AR)-induced gene activation (By similarity).
   
 
 0.738
C3YK34_BRAFL
Uncharacterized protein.
      
 0.738
C3ZJ99_BRAFL
SWIRM domain-containing protein.
   
 
 0.738
C3YAF2_BRAFL
OTU domain-containing protein.
      
 0.708
C3YR27_BRAFL
Ubiquitin carboxyl-terminal hydrolase.
      
 0.705
C3XRB5_BRAFL
USP domain-containing protein.
   
  
 0.677
C3ZNV3_BRAFL
Ubiquitin carboxyl-terminal hydrolase.
   
  
 0.555
Rab23b
Ubiquitin carboxyl-terminal hydrolase.
   
  
 0.553
C3Z126_BRAFL
Ubiquitin carboxyl-terminal hydrolase.
      
 0.548
C3XWK4_BRAFL
Ubiquitin carboxyl-terminal hydrolase.
      
 0.538
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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