C3YCD2_BRAFL protein (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C3YCD2_BRAFL

Kri1_C domain-containing protein. (728 aa)

Predicted Functional Partners:

C3ZTK8_BRAFL

0.971

C3ZIQ1_BRAFL

0.899

C3XQA9_BRAFL

0.862

C3YR28_BRAFL

0.860

C3YR55_BRAFL

0.830

C3YDE2_BRAFL

0.812

C3XUG6_BRAFL

0.811

C3Z7M1_BRAFL

0.808

C3YZ97_BRAFL

0.801

C3YPQ3_BRAFL

0.792

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XQA9_BRAFL	C3YCD2_BRAFL	C3XQA9	C3YCD2	Bms1-type G domain-containing protein.	Kri1_C domain-containing protein.	0.862
C3XQA9_BRAFL	C3YPQ3_BRAFL	C3XQA9	C3YPQ3	Bms1-type G domain-containing protein.	Brix domain-containing protein.	0.998
C3XQA9_BRAFL	C3YR28_BRAFL	C3XQA9	C3YR28	Bms1-type G domain-containing protein.	Uncharacterized protein.	0.954
C3XQA9_BRAFL	C3YR55_BRAFL	C3XQA9	C3YR55	Bms1-type G domain-containing protein.	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	0.999
C3XQA9_BRAFL	C3YZ97_BRAFL	C3XQA9	C3YZ97	Bms1-type G domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
C3XQA9_BRAFL	C3Z7M1_BRAFL	C3XQA9	C3Z7M1	Bms1-type G domain-containing protein.	Uncharacterized protein.	0.991
C3XQA9_BRAFL	C3ZIQ1_BRAFL	C3XQA9	C3ZIQ1	Bms1-type G domain-containing protein.	Uncharacterized protein.	0.999
C3XQA9_BRAFL	C3ZTK8_BRAFL	C3XQA9	C3ZTK8	Bms1-type G domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
C3XUG6_BRAFL	C3YCD2_BRAFL	C3XUG6	C3YCD2	POP4 domain-containing protein.	Kri1_C domain-containing protein.	0.811
C3XUG6_BRAFL	C3YDE2_BRAFL	C3XUG6	C3YDE2	POP4 domain-containing protein.	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.	0.998
C3XUG6_BRAFL	C3YZ97_BRAFL	C3XUG6	C3YZ97	POP4 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.486
C3YCD2_BRAFL	C3XQA9_BRAFL	C3YCD2	C3XQA9	Kri1_C domain-containing protein.	Bms1-type G domain-containing protein.	0.862
C3YCD2_BRAFL	C3XUG6_BRAFL	C3YCD2	C3XUG6	Kri1_C domain-containing protein.	POP4 domain-containing protein.	0.811
C3YCD2_BRAFL	C3YDE2_BRAFL	C3YCD2	C3YDE2	Kri1_C domain-containing protein.	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.	0.812
C3YCD2_BRAFL	C3YPQ3_BRAFL	C3YCD2	C3YPQ3	Kri1_C domain-containing protein.	Brix domain-containing protein.	0.792
C3YCD2_BRAFL	C3YR28_BRAFL	C3YCD2	C3YR28	Kri1_C domain-containing protein.	Uncharacterized protein.	0.860
C3YCD2_BRAFL	C3YR55_BRAFL	C3YCD2	C3YR55	Kri1_C domain-containing protein.	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	0.830
C3YCD2_BRAFL	C3YZ97_BRAFL	C3YCD2	C3YZ97	Kri1_C domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.801
C3YCD2_BRAFL	C3Z7M1_BRAFL	C3YCD2	C3Z7M1	Kri1_C domain-containing protein.	Uncharacterized protein.	0.808
C3YCD2_BRAFL	C3ZIQ1_BRAFL	C3YCD2	C3ZIQ1	Kri1_C domain-containing protein.	Uncharacterized protein.	0.899