C3YGU0_BRAFL protein (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C3YGU0_BRAFL

Aamy domain-containing protein. (550 aa)

Predicted Functional Partners:

C3XU37_BRAFL

0.735

C3XU39_BRAFL

0.735

C3Z5S9_BRAFL

0.679

C3XRL1_BRAFL

0.576

C3YJ03_BRAFL

0.550

C3Y6M5_BRAFL

0.547

C3Y8K0_BRAFL

0.547

C3Y8K1_BRAFL

0.547

C3YCZ3_BRAFL

0.547

C3XU28_BRAFL

0.540

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XRL1_BRAFL	C3YGU0_BRAFL	C3XRL1	C3YGU0	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Aamy domain-containing protein.	0.576
C3XRL1_BRAFL	C3YJ03_BRAFL	C3XRL1	C3YJ03	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Uncharacterized protein.	0.614
C3XRL1_BRAFL	C3Z5S9_BRAFL	C3XRL1	C3Z5S9	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Aamy domain-containing protein.	0.999
C3XU28_BRAFL	C3YGU0_BRAFL	C3XU28	C3YGU0	Uncharacterized protein.	Aamy domain-containing protein.	0.540
C3XU37_BRAFL	C3YGU0_BRAFL	C3XU37	C3YGU0	Uncharacterized protein.	Aamy domain-containing protein.	0.735
C3XU39_BRAFL	C3YGU0_BRAFL	C3XU39	C3YGU0	Uncharacterized protein.	Aamy domain-containing protein.	0.735
C3Y6M5_BRAFL	C3YGU0_BRAFL	C3Y6M5	C3YGU0	Uncharacterized protein.	Aamy domain-containing protein.	0.547
C3Y8K0_BRAFL	C3YGU0_BRAFL	C3Y8K0	C3YGU0	Uncharacterized protein.	Aamy domain-containing protein.	0.547
C3Y8K1_BRAFL	C3YGU0_BRAFL	C3Y8K1	C3YGU0	Uncharacterized protein.	Aamy domain-containing protein.	0.547
C3YCZ3_BRAFL	C3YGU0_BRAFL	C3YCZ3	C3YGU0	Uncharacterized protein.	Aamy domain-containing protein.	0.547
C3YGU0_BRAFL	C3XRL1_BRAFL	C3YGU0	C3XRL1	Aamy domain-containing protein.	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.576
C3YGU0_BRAFL	C3XU28_BRAFL	C3YGU0	C3XU28	Aamy domain-containing protein.	Uncharacterized protein.	0.540
C3YGU0_BRAFL	C3XU37_BRAFL	C3YGU0	C3XU37	Aamy domain-containing protein.	Uncharacterized protein.	0.735
C3YGU0_BRAFL	C3XU39_BRAFL	C3YGU0	C3XU39	Aamy domain-containing protein.	Uncharacterized protein.	0.735
C3YGU0_BRAFL	C3Y6M5_BRAFL	C3YGU0	C3Y6M5	Aamy domain-containing protein.	Uncharacterized protein.	0.547
C3YGU0_BRAFL	C3Y8K0_BRAFL	C3YGU0	C3Y8K0	Aamy domain-containing protein.	Uncharacterized protein.	0.547
C3YGU0_BRAFL	C3Y8K1_BRAFL	C3YGU0	C3Y8K1	Aamy domain-containing protein.	Uncharacterized protein.	0.547
C3YGU0_BRAFL	C3YCZ3_BRAFL	C3YGU0	C3YCZ3	Aamy domain-containing protein.	Uncharacterized protein.	0.547
C3YGU0_BRAFL	C3YJ03_BRAFL	C3YGU0	C3YJ03	Aamy domain-containing protein.	Uncharacterized protein.	0.550
C3YGU0_BRAFL	C3Z5S9_BRAFL	C3YGU0	C3Z5S9	Aamy domain-containing protein.	Aamy domain-containing protein.	0.679