STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3YI58_BRAFLTPR_REGION domain-containing protein. (720 aa)    
Predicted Functional Partners:
C3Z1V1_BRAFL
DNA_MISMATCH_REPAIR_2 domain-containing protein.
   
  
 0.517
C3YFB0_BRAFL
RING-type domain-containing protein.
    
 
 0.478
C3Y7J4_BRAFL
HORMA domain-containing protein.
   
 
 0.469
C3YI56_BRAFL
Uncharacterized protein.
  
     0.458
C3Z3N5_BRAFL
Spc7 domain-containing protein.
   
  
 0.445
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.