STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3YK56_BRAFLUncharacterized protein. (362 aa)    
Predicted Functional Partners:
C3ZBP9_BRAFL
Beta_elim_lyase domain-containing protein.
      
 0.499
C3YQ06_BRAFL
Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.
 
      0.478
C3Z1L6_BRAFL
Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
   
 
 0.478
C3XQ45_BRAFL
TRAM domain-containing protein.
      
 0.453
C3XQ47_BRAFL
MTTase N-terminal domain-containing protein.
      
 0.453
C3ZUX6_BRAFL
UEV domain-containing protein.
    
 
 0.449
C3ZHL0_BRAFL
Uncharacterized protein.
      
 0.439
C3Z939_BRAFL
CHCH domain-containing protein.
      
 0.434
C3Z470_BRAFL
Uncharacterized protein.
 
    
 0.402
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.