C3YK87_BRAFL protein (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C3YK87_BRAFL

SH3 domain-containing protein. (54 aa)

Predicted Functional Partners:

C3ZXU0_BRAFL

0.643

C3YQ08_BRAFL

0.474

C3Z0U1_BRAFL

0.469

C3ZI22_BRAFL

0.468

C3ZQW1_BRAFL

0.450

C4A0H4_BRAFL

0.414

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3YK87_BRAFL	C3YQ08_BRAFL	C3YK87	C3YQ08	SH3 domain-containing protein.	Uncharacterized protein.	0.474
C3YK87_BRAFL	C3Z0U1_BRAFL	C3YK87	C3Z0U1	SH3 domain-containing protein.	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	0.469
C3YK87_BRAFL	C3ZI22_BRAFL	C3YK87	C3ZI22	SH3 domain-containing protein.	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	0.468
C3YK87_BRAFL	C3ZQW1_BRAFL	C3YK87	C3ZQW1	SH3 domain-containing protein.	TPR_REGION domain-containing protein.	0.450
C3YK87_BRAFL	C3ZXU0_BRAFL	C3YK87	C3ZXU0	SH3 domain-containing protein.	Uncharacterized protein.	0.643
C3YK87_BRAFL	C4A0H4_BRAFL	C3YK87	C4A0H4	SH3 domain-containing protein.	Actin-related protein 2; ATP-binding component of the Arp2/3 complex, a multiprotein complex that mediates actin polymerization upon stimulation by nucleation-promoting factor (NPF). The Arp2/3 complex mediates the formation of branched actin networks in the cytoplasm, providing the force for cell motility. Seems to contact the pointed end of the daughter actin filament.	0.414
C3YQ08_BRAFL	C3YK87_BRAFL	C3YQ08	C3YK87	Uncharacterized protein.	SH3 domain-containing protein.	0.474
C3YQ08_BRAFL	C3Z0U1_BRAFL	C3YQ08	C3Z0U1	Uncharacterized protein.	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	0.997
C3YQ08_BRAFL	C3ZI22_BRAFL	C3YQ08	C3ZI22	Uncharacterized protein.	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	0.997
C3Z0U1_BRAFL	C3YK87_BRAFL	C3Z0U1	C3YK87	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	SH3 domain-containing protein.	0.469
C3Z0U1_BRAFL	C3YQ08_BRAFL	C3Z0U1	C3YQ08	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	Uncharacterized protein.	0.997
C3Z0U1_BRAFL	C3ZI22_BRAFL	C3Z0U1	C3ZI22	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	0.998
C3ZI22_BRAFL	C3YK87_BRAFL	C3ZI22	C3YK87	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	SH3 domain-containing protein.	0.468
C3ZI22_BRAFL	C3YQ08_BRAFL	C3ZI22	C3YQ08	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Uncharacterized protein.	0.997
C3ZI22_BRAFL	C3Z0U1_BRAFL	C3ZI22	C3Z0U1	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	0.998
C3ZQW1_BRAFL	C3YK87_BRAFL	C3ZQW1	C3YK87	TPR_REGION domain-containing protein.	SH3 domain-containing protein.	0.450
C3ZXU0_BRAFL	C3YK87_BRAFL	C3ZXU0	C3YK87	Uncharacterized protein.	SH3 domain-containing protein.	0.643
C3ZXU0_BRAFL	C4A0H4_BRAFL	C3ZXU0	C4A0H4	Uncharacterized protein.	Actin-related protein 2; ATP-binding component of the Arp2/3 complex, a multiprotein complex that mediates actin polymerization upon stimulation by nucleation-promoting factor (NPF). The Arp2/3 complex mediates the formation of branched actin networks in the cytoplasm, providing the force for cell motility. Seems to contact the pointed end of the daughter actin filament.	0.993
C4A0H4_BRAFL	C3YK87_BRAFL	C4A0H4	C3YK87	Actin-related protein 2; ATP-binding component of the Arp2/3 complex, a multiprotein complex that mediates actin polymerization upon stimulation by nucleation-promoting factor (NPF). The Arp2/3 complex mediates the formation of branched actin networks in the cytoplasm, providing the force for cell motility. Seems to contact the pointed end of the daughter actin filament.	SH3 domain-containing protein.	0.414
C4A0H4_BRAFL	C3ZXU0_BRAFL	C4A0H4	C3ZXU0	Actin-related protein 2; ATP-binding component of the Arp2/3 complex, a multiprotein complex that mediates actin polymerization upon stimulation by nucleation-promoting factor (NPF). The Arp2/3 complex mediates the formation of branched actin networks in the cytoplasm, providing the force for cell motility. Seems to contact the pointed end of the daughter actin filament.	Uncharacterized protein.	0.993