C3YKG1_BRAFL protein (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C3YKG1_BRAFL

F-box domain-containing protein. (1173 aa)

Predicted Functional Partners:

C3YP57_BRAFL

0.918

C3YB87_BRAFL

0.724

C3ZRF6_BRAFL

0.604

C3YTV2_BRAFL

0.590

C3XXN0_BRAFL

0.551

C3XQH0_BRAFL

0.510

C3ZDY2_BRAFL

0.509

C3Z2K0_BRAFL

0.480

C3Y4H3_BRAFL

0.451

C3ZXJ3_BRAFL

0.440

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XQH0_BRAFL	C3YKG1_BRAFL	C3XQH0	C3YKG1	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	F-box domain-containing protein.	0.510
C3XQH0_BRAFL	C3YP57_BRAFL	C3XQH0	C3YP57	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	Uncharacterized protein; Belongs to the SKP1 family.	0.432
C3XQH0_BRAFL	C3ZXJ3_BRAFL	C3XQH0	C3ZXJ3	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	Uncharacterized protein.	0.977
C3XXN0_BRAFL	C3Y4H3_BRAFL	C3XXN0	C3Y4H3	RING-type domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.998
C3XXN0_BRAFL	C3YB87_BRAFL	C3XXN0	C3YB87	RING-type domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.999
C3XXN0_BRAFL	C3YKG1_BRAFL	C3XXN0	C3YKG1	RING-type domain-containing protein.	F-box domain-containing protein.	0.551
C3XXN0_BRAFL	C3YP57_BRAFL	C3XXN0	C3YP57	RING-type domain-containing protein.	Uncharacterized protein; Belongs to the SKP1 family.	0.999
C3XXN0_BRAFL	C3YTV2_BRAFL	C3XXN0	C3YTV2	RING-type domain-containing protein.	TIP120 domain-containing protein.	0.984
C3XXN0_BRAFL	C3Z2K0_BRAFL	C3XXN0	C3Z2K0	RING-type domain-containing protein.	Uncharacterized protein.	0.749
C3XXN0_BRAFL	C3ZDY2_BRAFL	C3XXN0	C3ZDY2	RING-type domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.990
C3XXN0_BRAFL	C3ZRF6_BRAFL	C3XXN0	C3ZRF6	RING-type domain-containing protein.	Ubiquitin-like domain-containing protein.	0.991
C3Y4H3_BRAFL	C3XXN0_BRAFL	C3Y4H3	C3XXN0	CULLIN_2 domain-containing protein; Belongs to the cullin family.	RING-type domain-containing protein.	0.998
C3Y4H3_BRAFL	C3YB87_BRAFL	C3Y4H3	C3YB87	CULLIN_2 domain-containing protein; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.747
C3Y4H3_BRAFL	C3YKG1_BRAFL	C3Y4H3	C3YKG1	CULLIN_2 domain-containing protein; Belongs to the cullin family.	F-box domain-containing protein.	0.451
C3Y4H3_BRAFL	C3YP57_BRAFL	C3Y4H3	C3YP57	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein; Belongs to the SKP1 family.	0.860
C3Y4H3_BRAFL	C3YTV2_BRAFL	C3Y4H3	C3YTV2	CULLIN_2 domain-containing protein; Belongs to the cullin family.	TIP120 domain-containing protein.	0.970
C3Y4H3_BRAFL	C3Z2K0_BRAFL	C3Y4H3	C3Z2K0	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.633
C3Y4H3_BRAFL	C3ZDY2_BRAFL	C3Y4H3	C3ZDY2	CULLIN_2 domain-containing protein; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.874
C3Y4H3_BRAFL	C3ZRF6_BRAFL	C3Y4H3	C3ZRF6	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Ubiquitin-like domain-containing protein.	0.987
C3YB87_BRAFL	C3XXN0_BRAFL	C3YB87	C3XXN0	CULLIN_2 domain-containing protein; Belongs to the cullin family.	RING-type domain-containing protein.	0.999