STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3YKI6_BRAFLMFAP1 domain-containing protein. (91 aa)    
Predicted Functional Partners:
C3ZFR3_BRAFL
PRP38_assoc domain-containing protein.
   
 0.998
C3Y0R4_BRAFL
Uncharacterized protein.
   
 0.995
C3ZQN8_BRAFL
Uncharacterized protein.
   
 0.995
C3Z7L6_BRAFL
Nop domain-containing protein.
   
 0.991
C3Z8J1_BRAFL
TOG domain-containing protein.
   
 
 0.989
C3YIU9_BRAFL
Uncharacterized protein.
   
 
 0.987
C3XTF6_BRAFL
Small nuclear ribonucleoprotein Sm D2.
   
 
 0.986
C3ZKU5_BRAFL
WD_REPEATS_REGION domain-containing protein.
   
  0.986
C3ZLB5_BRAFL
Matrin-type domain-containing protein.
   
 
 0.986
C3YCJ5_BRAFL
LRRcap domain-containing protein.
   
 
 0.985
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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