STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3YKR5_BRAFLUncharacterized protein. (1716 aa)    
Predicted Functional Partners:
C3YBW1_BRAFL
Uncharacterized protein.
   
 0.980
MYSM1
Histone H2A deubiquitinase MYSM1; Metalloprotease that specifically deubiquitinates monoubiquitinated histone H2A, a specific tag for epigenetic transcriptional repression, thereby acting as a coactivator. Preferentially deubiquitinates monoubiquitinated H2A in hyperacetylated nucleosomes. Deubiquitination of histone H2A leads to facilitate the phosphorylation and dissociation of histone H1 from the nucleosome. Acts as a coactivator by participating in the initiation and elongation steps of androgen receptor (AR)-induced gene activation (By similarity).
    
 
 0.739
C3ZJ99_BRAFL
SWIRM domain-containing protein.
    
 
 0.739
C3ZTZ4_BRAFL
Uncharacterized protein.
    
 0.592
C3Z7M9_BRAFL
WD_REPEATS_REGION domain-containing protein.
     
 0.582
C3Y1V6_BRAFL
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.580
C3YWS2_BRAFL
Robl_LC7 domain-containing protein.
   
  0.578
C3YEM3_BRAFL
Uncharacterized protein.
    
 0.577
C3XTE9_BRAFL
Uncharacterized protein.
     
 0.567
C3Y0T7_BRAFL
AMPKBI domain-containing protein.
     
 
0.540
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
Server load: low (26%) [HD]