STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3YNV5_BRAFLUncharacterized protein. (567 aa)    
Predicted Functional Partners:
C3ZMJ6_BRAFL
CPSF_A domain-containing protein.
    
 
 0.962
C3ZF52_BRAFL
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 
 0.945
C3XYH7_BRAFL
WD_REPEATS_REGION domain-containing protein.
     
 0.935
C3Y342_BRAFL
Uncharacterized protein.
    
 
 0.902
C3XY57_BRAFL
WD_REPEATS_REGION domain-containing protein.
     
  0.900
C3YQ49_BRAFL
DDA1 domain-containing protein.
    
 
 0.791
C3XXN0_BRAFL
RING-type domain-containing protein.
    
 
 0.603
C3XQU2_BRAFL
SKIP_SNW domain-containing protein.
      
 0.524
C3YL49_BRAFL
SAGA-associated factor 11 homolog; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription.
      
 0.517
C3YB90_BRAFL
ETS domain-containing protein.
    
 
 0.510
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.