STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3YU00_BRAFLUncharacterized protein. (740 aa)    
Predicted Functional Partners:
C3ZMU2_BRAFL
Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.
    
0.968
C3Y1H3_BRAFL
Uncharacterized protein.
    
 0.965
C3YS40_BRAFL
Uncharacterized protein.
    
 0.965
C3YWV0_BRAFL
Uncharacterized protein.
  
 
0.947
C3XRV3_BRAFL
Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.
    
0.944
C3YU01_BRAFL
Uncharacterized protein.
 
     0.919
C3Z2C5_BRAFL
Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.
    
 0.913
C3YCF0_BRAFL
Ncstrn_small domain-containing protein.
    
 0.906
C3Z610_BRAFL
JmjC domain-containing protein.
    
 
 0.876
C3XQU2_BRAFL
SKIP_SNW domain-containing protein.
    
 0.780
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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