C3YVF6_BRAFL protein (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C3YVF6_BRAFL

Uncharacterized protein. (806 aa)

Predicted Functional Partners:

C3Y420_BRAFL

0.977

C3ZK47_BRAFL

0.958

C3XPQ9_BRAFL

0.830

C3XYN4_BRAFL

0.776

C3YGF5_BRAFL

0.762

C3Z2U3_BRAFL

0.707

C3Z7R8_BRAFL

0.688

C3XTE3_BRAFL

0.679

C3Y076_BRAFL

0.635

C3XTI0_BRAFL

0.629

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XPQ9_BRAFL	C3XTE3_BRAFL	C3XPQ9	C3XTE3	MICOS complex subunit MIC10; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	Uncharacterized protein.	0.408
C3XPQ9_BRAFL	C3Y420_BRAFL	C3XPQ9	C3Y420	MICOS complex subunit MIC10; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.990
C3XPQ9_BRAFL	C3YVF6_BRAFL	C3XPQ9	C3YVF6	MICOS complex subunit MIC10; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	Uncharacterized protein.	0.830
C3XPQ9_BRAFL	C3ZK47_BRAFL	C3XPQ9	C3ZK47	MICOS complex subunit MIC10; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	POTRA domain-containing protein.	0.792
C3XTE3_BRAFL	C3XPQ9_BRAFL	C3XTE3	C3XPQ9	Uncharacterized protein.	MICOS complex subunit MIC10; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.408
C3XTE3_BRAFL	C3XTI0_BRAFL	C3XTE3	C3XTI0	Uncharacterized protein.	Uncharacterized protein.	0.558
C3XTE3_BRAFL	C3Y420_BRAFL	C3XTE3	C3Y420	Uncharacterized protein.	MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.869
C3XTE3_BRAFL	C3YVF6_BRAFL	C3XTE3	C3YVF6	Uncharacterized protein.	Uncharacterized protein.	0.679
C3XTE3_BRAFL	C3ZK47_BRAFL	C3XTE3	C3ZK47	Uncharacterized protein.	POTRA domain-containing protein.	0.955
C3XTI0_BRAFL	C3XTE3_BRAFL	C3XTI0	C3XTE3	Uncharacterized protein.	Uncharacterized protein.	0.558
C3XTI0_BRAFL	C3Y420_BRAFL	C3XTI0	C3Y420	Uncharacterized protein.	MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.852
C3XTI0_BRAFL	C3YVF6_BRAFL	C3XTI0	C3YVF6	Uncharacterized protein.	Uncharacterized protein.	0.629
C3XTI0_BRAFL	C3ZK47_BRAFL	C3XTI0	C3ZK47	Uncharacterized protein.	POTRA domain-containing protein.	0.911
C3XYN4_BRAFL	C3Y076_BRAFL	C3XYN4	C3Y076	Uncharacterized protein.	Uncharacterized protein.	0.418
C3XYN4_BRAFL	C3YGF5_BRAFL	C3XYN4	C3YGF5	Uncharacterized protein.	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	0.999
C3XYN4_BRAFL	C3YVF6_BRAFL	C3XYN4	C3YVF6	Uncharacterized protein.	Uncharacterized protein.	0.776
C3XYN4_BRAFL	C3Z2U3_BRAFL	C3XYN4	C3Z2U3	Uncharacterized protein.	ATP synthase subunit gamma.	0.886
C3XYN4_BRAFL	C3Z7R8_BRAFL	C3XYN4	C3Z7R8	Uncharacterized protein.	Uncharacterized protein.	0.952
C3Y076_BRAFL	C3XYN4_BRAFL	C3Y076	C3XYN4	Uncharacterized protein.	Uncharacterized protein.	0.418
C3Y076_BRAFL	C3YGF5_BRAFL	C3Y076	C3YGF5	Uncharacterized protein.	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	0.789